Prof. Nirmalya Bag

Prof. Nirmalya Bag

Assistant Professor

Profile

Personal Website

Bio / CV

nirmalya@chem.iitkgp.ac.in

Room 303, Tower A, JCG-PCR Science Block, Department of Chemistry, Indian Institute of Technology, Kharagpur, West Bengal, India 721302

Education

<p>PhD (Chemistry), National University of Singapore, Singapore</p>

<p>MSc (Chemistry), Indian Institute of Technology Bombay, India</p>

Experience

<p>Postdoc: Cornell University, NY</p>

<p>Visiting Scientist: University of Toronto, Canada</p>

Research Statement

Research in our laboratory aims at understanding biological processes at the molecular level through the lens of physical chemistry. We primarily investigate the processes underlying cell’s response  to environmental cues/signals (e.g., chemotaxis in response to external chemical stimuli). This is done by a set of plasma membrane bound proteins (such as transmembrane receptors, sensors, and ion channels) that is poised to respond to the environmental changes and initiate an array of biochemical reactions eventually leading to intracellular signal transduction. A key biophysical characteristic of the plasma membrane is its capacity to undergo liquid-liquid phase separation through collectives of lipid-lipid, protein-lipid, and protein-protein interactions. Interestingly, our current work provides strong evidence that phase separation orchestrates the optimality of the plasma membrane localized biochemical reactions necessary for regular cellular functions. This also implies that alternation of membrane phase separation may have non-physiological consequences leading to diseases such as cancer and neurodegenerative disorders. We employ a wide variety of high resolution fluorescence microscopy and spectroscopy techniques (e.g., super-resolution microscopy, various modalities of fluorescence correlation spectroscopy (FCS) especically camera based Imaging FCS, Fluorescence lifetime imaging (FLIM), single particle tracking, and fluorescence anisotropy) as well as complementary biochemical tools to build the link between membrane biophysics and signalling. We currently focus on two signalling systems involving cell surface immuoreceptor, FcεRI, and epidermal growth factor receptor (EGFR) which are key components of our body’s innate immune machinery and development respectively. 

Publications

Books & Chapters

N. Bag, S. Huang, T. Wohland, "Investigating the Dynamics and Organization of Membrane Proteins and Lipids by Imaging Fluorescence Correlation Spectroscopy" Springer Biophysics Series: Membrane Organization and Dynamics, 2018

Journal Publications

N. Bag, E. London, D. A. Holowka, B. A. Baird, "Transbilayer Coupling of Lipids in Cells Investigated by Imaging Fluorescence Correlation Spectroscopy" Journal of Physical Chemistry B (Accepted), 2022
A. Batrouni,* N. Bag,* H. Phan, B. Baird, J. Baskin, "A Palmitoylation Code Controls PI4KIIIalpha Complex Formation and PI(4,5)P2 Homeostasis at the Plasma Membrane" Journal of Cell Science, 2022
N. Bag, A. Wagenknecht-Wiesner, A. Lee, S. Shi, D. A. Holowka, B. A. Baird., "Lipid-based and Protein-based Interactions Synergize Transmembrane Signaling Stimulated by Antigen-clustering of IgE Receptors" Proceedings of the National Academy of Sciences of the United States of America, 2021
J. A. Erstling,* J. A. Hinckley,* N. Bag,* J. Hersh, G. B. Feuer, R. Lee, H. F. Malarkey, K. Ma, B. A. Baird, U. B. Wiesner, "Ultrasmall, Bright, and Photostable Fluorescent Core-Shell Aluminosilicate Nanoparticles for Live-Cell Optical Super-Resolution Microscopy" Advanced Materials, 2021
N. Bag, M. Ramezani, D. Holowka, B. Baird, "Bringing Light to ER Contacts and a New Phase in Organelle Communication" Proceedings of the National Academy of Sciences of the United States of America, 2020
N. Bag, D. Holowka, B. Baird, "Imaging FCS Delineates Subtle Heterogeneity in Plasma Membranes of Resting Mast Cells" Molecular Biology of the Cell, 2020
J. K. Marzinek, N. Bag, R. G. Huber, D. A Holdbrook, T. Wohland, C. S. Verma, P. J. Bond, "A Funneled Conformational Landscape Governs Flavivirus Fusion Peptide Interaction with Lipid Membranes" Journal of Chemical Theory and Computation, 2018
S. Huang, S. Y. Lim, A. Gupta, N. Bag, T. Wohland, "Plasma Membrane Organization is Probe and Cell Line Dependent" Biochimica et Biophysica Acta – Biomembranes, 2017
X. X. Lim, A. Chandramohan, X. Y. E. Lim, N. Bag, K. K. Sharma, M. Wirawan, T. Wohland, S-M. Lok, G. S. Anand, "Conformational Changes in Intact Dengue Virus Reveal Serotype-specific Expansion" Nature Communications, 2017
N. Bag, X. W. Ng, J. Sankaran, T. Wohland, "Spatiotemporal Mapping of Diffusion Dynamics and Organization in Plasma Membranes" Methods and Applications of Fluorescence, 2016
J.W. Krieger, A.P. Singh, N. Bag, C.S. Garbe, T. E. Saunders, J. Langowski, T. Wohland, "Practical guidelines for Imaging Fluorescence (Cross-) Correlation Spectroscopy in Live Cells and Organisms" Nature Protocols, 2015
N. Bag,* S. Huang,* T. Wohland, "Plasma Membrane Organization of Epidermal Growth Factor Receptor in Resting and Ligand-Bound States" Biophysical Journal, 2015
X. W. Ng, N. Bag, T. Wohland, "Characterization of Lipid and Cell Membrane Organization by the Fluorescence Correlation Spectroscopy Diffusion Law" CHIMIA, 2015
N. Bag, T. Wohland, "Imaging Fluorescence Fluctuation Spectroscopy: New Tools for Quantitative Bioimaging" Annual Review of Physical Chemistry, 2014
S-M. Guo,* N. Bag,* A. Mishra, T. Wohland, M. Bathe, "Bayesian Total Internal Reflection Fluorescence Correlation Spectroscopy Reveals hIAPP-Induced Plasma Membrane Domain Organization in Live Cells." Biophysical Journal, 2014
N. Bag, D. H. X. Yap, T. Wohland, "Temperature Dependence of Diffusion in Model and Live Cell Membranes Characterized by Imaging Fluorescence Correlation Spectroscopy" Biochimica et Biophysica Acta – Biomembranes, 2014
N. Bag, A. Ali, V. S. Chauhan, T. Wohland, A. Mishra, "Membrane Destabilization by Monomeric hIAPP Observed by Imaging Fluorescence Correlation Spectroscopy" Chemical Communications, 2013
J. Sankaran, N. Bag, R. Kraut, T. Wohland, "Accuracy and Precision of Camera-Based Fluorescence Correlation Spectroscopy" Analytical Chemistry, 2013
N. Bag, J. Sankaran, A. Paul, R. Kraut, T. Wohland, "Calibration and Limits of Camera-Based Fluorescence Correlation Spectroscopy: A Supported Lipid Bilayer Study" ChemPhysChem, 2012
R. Kraut, N. Bag, T. Wohland, "Fluorescence Correlation Methods for Imaging Cellular Behavior of Sphingolipid-Interacting Probes" Methods in Cell Biology, 2012
T. N. Burai, N. Bag, S. Agarwal, E. S. S. Iyer, A. Datta, "Modulation of Fluorescence Properties of MMeAQ in Micelles and Cyclodextrins." Chemical Physics Letters, 2010

Projects

High Resolution Characterization of Plasma Membrane Biophysics and its Impact on Cellular Signaling by Fluorescence Techniques
Client: SERB, India
PI: Nirmalya Bag  |  Co-Consultant(s): --

Awards and Recognition

No awards on record.

Courses Taught

Chemistry Laboratory (CY19003)
Introduction to Quantum Chemistry and Spectroscopy (CY41009)
Molecular Spectroscopy and Molecular Structure (CY61044)
Molecular Thermodynamics and Molecular Reaction Dynamics (CY41212)
Advanced Physical Chemistry Laboratory (CY49202)
Physical Chemistry Laboratory II (CY39001)
Chemistry (CY11003)

Patents

No patents on record.

Research Group

Current Members

Arpita Tripathy
Arpita Tripathy
Role of extracellular vesicles in cancer
arpitatripathy05@kgpian.iitkgp.ac.in
Debnath Pratihar
Debnath Pratihar
Peptide-membrane interactions
debnathjgm001@gmail.com
Dishari Medda
Dishari Medda
Membrane Biophysics
DISHARIKGP@KGPIAN.IITKGP.AC.IN

Alumni

Chetan
Chetan
Membrane Biophysics